UBDS^3 2024
Program
Topics at a glance
proteomics, single-cell and spatial transcriptomics, pharmacology, cancer genomics, epidemiology, quantitative, statistical genetics and complex traits, ecology, population biology, phylogenetics, evolutionary and functional genetics and genomics, gut metagenomics, computational neuroscience and biophysics.
Statistical topics
Data visualisation and the grammar of graphics
Hypothesis testing
Regression analysis
Principal component analysis and other (non-linear) low-dimensional embeddings
Clustering
Classification
Introduction to machine learning
Computational topics
Basics of programming in R and Python: data structures and functions
Notebooks (quarto)
Principles of tidy data
Tidyverse for R
Pandas/Seaborn for Python
Bioconductor for biological sequence data and matrix-like omics data
Open science practices and working with GitHub
Biological topics
Biological sequence analysis
Read alignments, variant calling
Single-cell analysis
Proteomics data analysis
Working with image data
Instructors and lecturers
EMBL, Germany
Statistician, co-founder of Bioconductor, author of textbook “Modern Statistics for Modern Biology”
Stanford University, USA
Epidemiologist, population and statistical geneticist
OIST, Japan
Bioinformatician, expert in genomics and evolution
EMBL-EBI, UK
Founder of functional genomics databases at EMBL-EBI
CRG, Spain
Statistician, coordinator of the Bioinformatics and Genomics Programme of CRG, Barcelona
Kseniia Kravchenko
University of Luxemburg and Smithsonian Tropical Research Institute
Sebastian Lobentanzer
Heidelberg University, Germany
Oleh Prylutskyi
Karazin Kharkiv National University, Ukraine
University of Zurich, Switzerland
Computational biologist, expert in single-cell RNA-seq
Universitat de Girona, Spain
Expert in machine learning
Kateryna Pantiukh
University of Tartu, Estonia
Anastasiia Horlova
Berlin Institute of Health at Charité - Center for Digital Health, Germany
Lada Isakova
Okinawa Institute of Science and Technology, Japan
Bohomoletz Institute of Physiology, Ukraine
Guifré Torruella i Cortés
Institut de Biologia Evolutiva - CSIC UPF, Spain
Daryna Zavadska
Institut de Biologia Evolutiva - CSIC UPF, Spain
Nadiia Kasianchuk
Civitta & Kyiv School of Economics, Ukraine
University of Southern California, USA
Teaching assistants
Vladyslav Ostash
National Technical University of Ukraine “Igor Sikorsky Kyiv Polytechnic Institute”, Ukraine
Lev Tsarin
University of Nebraska Medical Center, USA
Matthias Meyer-Bender
EMBL, Germany
Julia Ruehle
CRG, Spain
Helene Tonnele
CRG, Spain
Ivan Blashchak
Bohomoletz Institute of Physiology, Ukraine
Mariia Utrobina
Université Laval, Canada
Maryna Yerofeieva
V. N. Karazin Kharkiv National University, Ukraine
Alona Shulenko
H.S. Skovoroda Kharkiv National Pedagogical University, Ukraine
Danylo Kravchuk
Bohomoletz Institute of Physiology, Ukraine
Olha Sur
Okinawa Institute of Science and Technology, Japan
Lev Kravchuk
.NET Developer & Bohomoletz Institute of Physiology, Ukraine
Sviatoslav Kharuk
Vasyl Stefanyk Precarpathian National University, Ukraine
EMBL, Germany
Oleh Mezhenskyi
Preste & Bohomoletz Institute of Physiology, Ukraine
Alisa Gorlova
Taras Shevchenko National University of Kyiv, Ukraine
Olena Ivanova
V.N.Karazin National University, Ukraine
Anastasiia Boshtova
Apixmed & University of Oxford, UK
ubds^3 becomes fully bilingual in 2024
We provide full two-week course involving classes and projects in Ukrainian and in English in 2024!
